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AT1G53190 AT1G53190 At5g53660 At5g53660 SDG40 SDG40 RCI1A RCI1A AT3G27200 AT3G27200 SPL13B SPL13B PFA-DSP5 PFA-DSP5 AT1G63150 AT1G63150 PRMT7 PRMT7 AT1G10120 AT1G10120 SURF1 SURF1
"AT1G63150" - Transacting siRNA generating locus in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AT1G63150Transacting siRNA generating locus (629 aa)    
Predicted Functional Partners:
AT1G53190
RING/U-box superfamily protein (494 aa)
           
  0.809
PFA-DSP5
Tyrosine specific protein phosphatase family protein (204 aa)
           
  0.733
AT3G27200
Cupredoxin superfamily protein (174 aa)
           
  0.710
PRMT7
Protein arginine methyltransferase 7; Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA) (724 aa)
           
  0.705
SPL13B
Squamosa promoter-binding-like protein 13; Trans-acting factor that binds specifically to the consensus nucleotide sequence 5’-TNCGTACAA-3’ (359 aa)
           
  0.670
SDG40
SET domain group 40 (491 aa)
     
   
  0.648
At5g53660
Growth-regulating factor 7; Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation (365 aa)
           
  0.499
RCI1A
General regulatory factor 3; Is associated with a DNA binding complex that binds to the G box, a well-characterized cis-acting DNA regulatory element found in plant genes (PubMed-7972511, PubMed-7870824, PubMed-16407442). Involved in the regulation of nutrient metabolism (PubMed-22104211, PubMed-21094157). Reciprocal negative transcription regulation of miR396 (PubMed-22751317). Negative regulator of constitutive freezing tolerance and cold acclimation by controlling cold-induced gene expression partially through an ethylene (ET)-dependent pathway; prevents ethylene (ET) biosynthesis, [...] (255 aa)
           
  0.489
AT1G10120
Transcription factor bHLH74; Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed-24130508) (366 aa)
           
  0.489
SURF1
SURFEIT 1; Probably involved in the biogenesis of the COX complex (354 aa)
     
   
  0.449
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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