Full Link:
STRINGSTRING
AT5G42140 AT5G42140 AT5G19420 AT5G19420 AT1G61690 AT1G61690 AT3G43230 AT3G43230 AT1G61620 AT1G61620 AT5G12350 AT5G12350 AT3G47660 AT3G47660 VIM4 VIM4 AT3G23270 AT3G23270 AT1G69710 AT1G69710 AT1G66045 AT1G66045
"VIM4" - VARIANT IN METHYLATION 4 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VIM4VARIANT IN METHYLATION 4; E3 ubiquitin-protein ligase. May participate in CpG methylation-dependent transcriptional regulation (By similarity) (622 aa)    
Predicted Functional Partners:
AT1G61620
Phosphoinositide binding (310 aa)
           
  0.861
AT1G66045
Uncharacterized protein (144 aa)
           
  0.853
AT5G42140
Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (1073 aa)
     
 
  0.847
AT5G19420
Regulator of chromosome condensation-like protein with FYVE zinc finger domain (1139 aa)
     
 
  0.847
AT5G12350
Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (1075 aa)
     
 
  0.847
AT3G47660
Regulator of chromosome condensation (RCC1) family protein (954 aa)
     
 
  0.847
AT3G23270
Regulator of chromosome condensation-like protein with FYVE zinc finger domain (1045 aa)
     
 
  0.847
AT1G69710
Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (1041 aa)
     
 
  0.847
AT3G43230
RING/FYVE/PHD zinc finger-containing protein (485 aa)
           
  0.841
AT1G61690
Phosphoinositide binding (1171 aa)
           
  0.841
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (2%)