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AT5G65490 AT5G65490 LOS1 LOS1 AT5G61140 AT5G61140 AT3G12915 AT3G12915 AT1G66510 AT1G66510 AT4G38780 AT4G38780 At1g80070 At1g80070 DOT2 DOT2 RCK RCK MEE5 MEE5 AT5G25230 AT5G25230
"AT1G66510" - AAR2 protein family in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G66510AAR2 protein family (399 aa)    
Predicted Functional Partners:
AT3G12915
Ribosomal protein S5/Elongation factor G/III/V family protein (820 aa)
       
 
  0.977
LOS1
Elongation factor EF-2; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (By similarity). Involved in cold responses leading to freezing tolerance via the induction of cold-responsive genes (PubMed-9401 [...] (843 aa)
       
 
  0.977
AT4G38780
Pre-mRNA-processing-splicing factor (2332 aa)
       
 
  0.975
At1g80070
ABNORMAL SUSPENSOR 2 (2359 aa)
       
 
  0.975
AT5G61140
U5 small nuclear ribonucleoprotein helicase (2157 aa)
       
 
  0.962
RCK
ROCK-N-ROLLERS; DNA helicase required for crossover formation, complete synapsis of homologous chromosomes and bivalent formation during meiosis. Is specific to recombination events resulting in interference-sensitive crossovers (class I meiotic crossover) (1133 aa)
       
 
  0.962
AT5G65490
Uncharacterized protein (643 aa)
     
      0.944
DOT2
DEFECTIVELY ORGANIZED TRIBUTARIES 2; Plays a role in root, shoot and flower development. Probably required for normal root and shoot meristem organization and maintenance and the proper expression of PIN and PLT genes (PubMed-19000164). Involved in leaf vasculature patterning (PubMed-18643975) (820 aa)
       
      0.917
AT5G25230
Elongation factor EF-2 (973 aa)
     
 
  0.916
MEE5
MATERNAL EFFECT EMBRYO ARREST 5 (987 aa)
     
 
  0.916
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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