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NOXY38 NOXY38 AT1G66430 AT1G66430 AT3G45760 AT3G45760 AT1G66540 AT1G66540 AT1G66660 AT1G66660 AT1G66460 AT1G66460 AT2G02880 AT2G02880 RRP41L RRP41L LIG6 LIG6 UBC27 UBC27 SGA2 SGA2
"AT1G66660" - E3 ubiquitin-protein ligase SINA-like 5 in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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AT1G66660E3 ubiquitin-protein ligase SINA-like 5; E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates (348 aa)    
Predicted Functional Partners:
AT1G66460
Protein kinase-like protein (467 aa)
       
 
  0.812
AT1G66430
Fructokinase; May play an important role in maintaining the flux of carbon towards starch formation (384 aa)
           
  0.810
AT1G66540
Putative cytochrome P450 (386 aa)
           
  0.809
LIG6
DNA LIGASE 6 (1396 aa)
           
  0.808
AT2G02880
Mucin-related (314 aa)
     
   
  0.746
NOXY38
Non responding to oxylipins 38; mRNA-binding protein involved in proper cytoplasmic distribution of mitochondria (1419 aa)
           
  0.670
RRP41L
RRP41 like; Non-catalytic component of the RNA exosome complex which has 3’->5’ exoribonuclease activity and participates in a multitude of cellular RNA processing, maturation and degradation events. In vitro, is a processive phosphorolytic exonuclease and requires a single-stranded poly(A) tail on the substrate RNA for its activity (By similarity). Plays an important role in seed germination and early seedling growth by mediating specific cytoplasmic mRNA decay of transcripts coding for the abscisic acid (ABA) biosynthetic enzymes NCED5 and NCED6, and the ABA signaling transcription f [...] (256 aa)
           
  0.609
SGA2
Histone chaperone ASF1; Histone chaperone that facilitates histone deposition and histone exchange and removal during nucleosome assembly and disassembly (By similarity). While encoded by a region of the Arabidopsis thaliana genome that is homologous to the Brassica S- locus for self incompatibility, this protein may not play the same role in Arabidopsis thaliana (196 aa)
           
  0.592
UBC27
Ubiquitin-conjugating enzyme 27 (203 aa)
       
 
  0.536
AT3G45760
Nucleotidyltransferase family protein (474 aa)
       
      0.479
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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