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AT5G27920 AT5G27920 AT1G30200 AT1G30200 AT1G29470 AT1G29470 AT4G21720 AT4G21720 AT1G67480 AT1G67480 ATU2AF65A ATU2AF65A AT5G65685 AT5G65685 nPAP nPAP AT3G17120 AT3G17120 AT3G06330 AT3G06330 NAP1;4 NAP1;4
"AT1G67480" - F-box/kelch-repeat protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G67480F-box/kelch-repeat protein (376 aa)    
Predicted Functional Partners:
AT3G06330
RING/U-box superfamily protein (426 aa)
     
   
  0.872
AT4G21720
Uncharacterized protein (139 aa)
           
  0.872
AT3G17120
Uncharacterized protein (219 aa)
           
  0.872
AT1G30200
F-box protein (379 aa)
     
   
  0.747
AT5G65685
Soluble glycogen synthase-related protein (460 aa)
           
  0.734
AT5G27920
F-box protein (642 aa)
           
  0.733
NAP1;4
Nucleosome assembly protein1;4; May modulate chromatin structure by regulation of nucleosome assembly/disassembly (317 aa)
     
   
  0.694
AT1G29470
Putative methyltransferase PMT24 (770 aa)
           
  0.672
ATU2AF65A
Splicing factor U2af large subunit A; Necessary for the splicing of pre-mRNA (573 aa)
           
  0.635
nPAP
Nuclear poly(a) polymerase; Essential protein (PubMed-19956626). Polymerase that creates the 3’-poly(A) tail of mRNA’s (PubMed-15297145). Also required for the endoribonucleolytic cleavage reaction at some polyadenylation sites. May acquire specificity through interaction with a cleavage and polyadenylation specificity factor (CPSF) at its C-terminus (By similarity) (765 aa)
           
  0.603
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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