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RPL21C RPL21C AT3G54210 AT3G54210 AT1G64510 AT1G64510 PRPL11 PRPL11 AT3G13120 AT3G13120 EMB3136 EMB3136 emb2184 emb2184 CYP38 CYP38 RPS17 RPS17 PSRP3/1 PSRP3/1 AT1G69020 AT1G69020
"PSRP3/1" - 30S ribosomal protein 3-1 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSRP3/130S ribosomal protein 3-1; Probably a ribosomal protein or a ribosome-associated protein (166 aa)    
Predicted Functional Partners:
RPS17
Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5’-end of 16S ribosomal RNA (By similarity). Required for optimal plastid performance in terms of photosynthesis and growth. Required for the translation of plastid mRNAs. Plays a critical role in biosynthesis of thylakoid membrane proteins encoded by chloroplast genes (PubMed-22900828) (149 aa)
     
   
  0.950
AT1G69020
Prolyl oligopeptidase-like protein (757 aa)
           
  0.925
AT3G54210
50S ribosomal protein L17; This protein binds directly to 23S ribosomal RNA (211 aa)
     
        0.924
emb2184
Embryo defective 2184; Binds the 23S rRNA (144 aa)
   
        0.920
RPL21C
50S ribosomal protein L21; This protein binds to 23S ribosomal RNA in the presence of protein L20 (220 aa)
     
   
  0.913
PRPL11
50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors (222 aa)
     
   
  0.913
CYP38
Cyclophilin 38; Required for the assembly and stabilization of PSII, but has no PPIases activity (437 aa)
   
        0.904
EMB3136
EMBRYO DEFECTIVE 3136; This protein binds directly to 23S ribosomal RNA (220 aa)
     
        0.901
AT3G13120
30S ribosomal protein S10 (191 aa)
     
        0.896
AT1G64510
30S ribosomal protein S6 alpha; Binds together with S18 to 16S ribosomal RNA (207 aa)
   
        0.896
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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