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AT5G15700 AT5G15700 NRPC2 NRPC2 AT4G02400 AT4G02400 MLH3 MLH3 AT4G34910 AT4G34910 AT1G68930 AT1G68930 AT5G39840 AT5G39840 AT5G52850 AT5G52850 SURF1 SURF1 AT3G02330 AT3G02330 AT1G48510 AT1G48510
"AT1G68930" - Pentatricopeptide repeat-containing protein in Arabidopsis thaliana
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AT1G68930Pentatricopeptide repeat-containing protein (743 aa)    
Predicted Functional Partners:
AT5G39840
Putative ATP-dependent RNA helicase; Major helicase player in mitochondrial RNA metabolism. Component of the mitochondrial degradosome (mtEXO) complex, that degrades 3’ overhang double-stranded RNA with a 3’-to-5’ directionality in an ATP-dependent manner. ATPase and ATP- dependent multisubstrate helicase, able to unwind double-stranded (ds) DNA and RNA, and RNA/DNA heteroduplexes in the 5’-to-3’ direction. Plays a role in the RNA surveillance system in mitochondria; regulates the stability of mature mRNAs, the removal of aberrantly formed mRNAs and the rapid degradation of non coding [...] (776 aa)
     
   
  0.613
AT5G15700
DNA-directed RNA polymerase 2; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1051 aa)
     
 
  0.478
SURF1
SURFEIT 1; Probably involved in the biogenesis of the COX complex (354 aa)
     
   
  0.471
NRPC2
Nuclear RNA polymerase C2; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Second largest core component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. Proposed to contribute to the polymerase catalytic activity and forms the polymerase active center together with the largest subunit. Pol III is composed of mobile elements and NRPC2 is part of the core element with the central large cleft and probably a clamp element that moves to open and close the cleft (1161 aa)
     
        0.468
AT4G34910
DEAD-box ATP-dependent RNA helicase 16 (626 aa)
     
        0.466
MLH3
MUTL protein homolog 3; Involved in DNA mismatch repair (MMR), correcting insertion-deletion loops (IDLs) resulting from DNA replication, DNA damage or from recombination events between non-identical sequences during meiosis. Component of the MutLbeta heterodimer, which probably forms a ternary complex with the MutSbeta heterodimer that initially recognizes the DNA mismatches. This complex is thought to be responsible for directing the downsteam MMR events, including strand discrimination, excision, and resynthesis. Plays a major role in promoting meiotic crossing-over and is involved [...] (1169 aa)
     
   
  0.451
AT1G48510
Surfeit locus 1 cytochrome c oxidase biogenesis protein; May be involved in the biogenesis of the COX complex (384 aa)
     
   
  0.449
AT4G02400
U3 ribonucleoprotein-like protein (855 aa)
     
   
  0.439
AT5G52850
Pentatricopeptide repeat-containing protein (893 aa)
     
     
0.436
AT3G02330
Pentatricopeptide repeat-containing protein (903 aa)
     
     
0.436
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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