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RCK RCK AT3G46960 AT3G46960 HEN2 HEN2 MTR4 MTR4 AT1G70020 AT1G70020 AT1G76630 AT1G76630 AT1G70220 AT1G70220 AT1G76700 AT1G76700 EMB25 EMB25 AHG2 AHG2 DCP1 DCP1
"AT1G70020" - Uncharacterized protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
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Databases
Textmining
[Homology]
Score
AT1G70020Uncharacterized protein (225 aa)    
Predicted Functional Partners:
AT1G70220
RNA-processing, Lsm domain (224 aa)
           
  0.954
AT1G76630
Superkiller protein 3-like protein; Component of the SKI complex which is thought to be involved in exosome-mediated RNA decay and associates with transcriptionally active genes in a manner dependent on PAF1 complex (PAF1C) (1168 aa)
           
  0.738
AT3G46960
Antiviral helicase SKI2; Component of the SKI complex which is thought to be involved in exosome-mediated RNA decay and associates with transcriptionally active genes in a manner dependent on PAF1 complex (PAF1C) (PubMed-22511887). Involved in the regulation of potassium deprivation stress response (PubMed-21535471) (1347 aa)
           
  0.675
MTR4
RNA helicase; ATP-dependent RNA helicase that associates with the RNA exosome complex (PubMed-21682783, PubMed-25144737). Required for proper rRNA biogenesis and development. Involved in the 3’- processing of the 7S pre-RNA to the mature 5.8S rRNA and also in the removal of rRNA maturation by-products (PubMed-21682783) (988 aa)
           
  0.673
EMB25
EMBRYO DEFECTIVE 25; RNA helicase involved in group II intron splicing (PubMed-26147377). Essential protein required during embryogenesis. Involved in post-transcriptional gene silencing. Modulates the determination of cell fate. Necessary for normal plasmodesmata (PD) development and aperture regulation (1171 aa)
           
  0.635
AHG2
ABA-HYPERSENSITIVE GERMINATION 2; 3’-exoribonuclease that has a preference for poly(A) tails of mRNAs, thereby efficiently degrading poly(A) tails. Exonucleolytic degradation of the poly(A) tail is often the first step in the decay of eukaryotic mRNAs. Essential for early development, possibly by participating in silencing certain maternal mRNAs translationally. May have a pivotal role in stress response (689 aa)
           
  0.553
HEN2
Hua enhancer 2; ATP-dependent RNA helicase that associates with the RNA exosome complex, with the cap binding complex (CBC) and with the NEXT-like complex. Involved in the degradation of a large number of non-coding nuclear exosome substrates such as snoRNA and miRNA precursors, incompletely spliced mRNAs, and spurious transcripts produced from pseudogenes and intergenic regions (PubMed-25144737). Involved in the maintenance of homeotic B and C gene expression in the reproductive whorls. Regulates floral organ spacing and identity, probably through the regulation of protein synthesis o [...] (995 aa)
           
  0.509
AT1G76700
Chaperone protein dnaJ 10; Have a continuous role in plant development probably in the structural organization of compartments (398 aa)
           
  0.497
DCP1
Decapping 1; As a component of the decapping complex, involved in the degradation of mRNAs. Essential for postembryonic development (367 aa)
           
  0.497
RCK
ROCK-N-ROLLERS; DNA helicase required for crossover formation, complete synapsis of homologous chromosomes and bivalent formation during meiosis. Is specific to recombination events resulting in interference-sensitive crossovers (class I meiotic crossover) (1133 aa)
           
  0.491
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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