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TK1b TK1b RH39 RH39 AT1G70200 AT1G70200 CP31B CP31B AT5G55220 AT5G55220 PTAC3 PTAC3 SVR7 SVR7 AT3G59040 AT3G59040 PTAC13 PTAC13 PTAC12 PTAC12 EMB1865 EMB1865
"AT1G70200" - RNA recognition motif-containing protein in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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[Homology]
Score
AT1G70200RNA recognition motif-containing protein (538 aa)    
Predicted Functional Partners:
PTAC13
Plastid transcriptionally active 13 (333 aa)
     
   
  0.850
AT3G59040
Pentatricopeptide repeat-containing protein (590 aa)
     
        0.819
TK1b
Thymidine kinase; Part of the salvage pathway for purine and pyrimidine deoxyribonucleotide synthesis. Phosphorylates preferentially purines over pyrimidines (282 aa)
     
   
  0.752
PTAC3
Plastid transcriptionally active 3 (910 aa)
     
   
  0.751
PTAC12
Plastid transcriptionally active 12; Involved in plastid gene expression (PubMed-16326926). Required in the nucleus for the initiation of photomorphogenesis mediated by phytochromes (PHYs) (e.g. PHYA and PHYB) by mediating PHYs localization to photobodies, especially in response to red and far-red light, and implicating phytochrome nuclear bodies as sites of proteolysis for PHYs and PIFs proteins (e.g. PIF1 and PIF3). Acts downstream of PHYs and upstream of DET1 (PubMed-20603003, PubMed-22895253) (527 aa)
     
        0.715
AT5G55220
Trigger factor type chaperone family protein; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase (By similarity) (547 aa)
     
        0.714
EMB1865
Embryo defective 1865 (848 aa)
     
        0.711
SVR7
Suppressor of variegation 7; Involved in chloroplast RNA processing. Could bind RNA (702 aa)
     
   
  0.709
RH39
RH39 (621 aa)
     
   
  0.686
CP31B
Chloroplast RNA-binding protein 31B; Required for specific RNA editing events in chloroplasts and stabilizes specific chloroplast mRNAs (PubMed-19297624) (289 aa)
     
   
  0.684
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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