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EMB2296 EMB2296 AT5G15200 AT5G15200 AT4G36130 AT4G36130 AT5G02870 AT5G02870 AT5G02960 AT5G02960 RPL5B RPL5B AT1G70600 AT1G70600 RIG RIG AT4G10450 AT4G10450 AT3G49910 AT3G49910 RPL23AA RPL23AA
"AT1G70600" - 60S ribosomal protein L27a-3 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G7060060S ribosomal protein L27a-3 (146 aa)    
Predicted Functional Partners:
EMB2296
Embryo defective 2296 (258 aa)
   
  0.999
AT5G02960
40S ribosomal protein S23-2 (142 aa)
   
  0.999
AT4G10450
60S ribosomal protein L9-2 (194 aa)
   
  0.999
AT3G49910
60S ribosomal protein L26-1 (146 aa)
   
  0.999
AT5G02870
60S ribosomal protein L4-2 (407 aa)
   
  0.999
RPL5B
Ribosomal protein L5 B; Binds to 5S ribosomal RNA (301 aa)
   
  0.999
RPL23AA
Ribosomal protein L23AA; Binds to a specific region on the 26S rRNA (154 aa)
   
  0.999
AT5G15200
Ribosomal protein S4 (198 aa)
   
  0.999
RIG
40S ribosomal protein S15-1 (152 aa)
   
  0.999
AT4G36130
60S ribosomal protein L8-3 (258 aa)
   
  0.999
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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