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STRINGSTRING
psbM psbM Solyc02g011990.1.1 Solyc02g011990.1.1 psbB psbB psbI psbI Solyc11g050770.1.1 Solyc11g050770.1.1 psbF psbF psbH psbH Solyc01g011480.1.1 Solyc01g011480.1.1 psbZ psbZ ycf4 ycf4 Solyc07g021240.1.1 Solyc07g021240.1.1
"Solyc01g011480.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g011480.1.1Uncharacterized protein (85 aa)    
Predicted Functional Partners:
psbB
Photosystem II CP47 chlorophyll apoprotein ; One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light-induced photochemical processes of PSII. PSII is a light- driven water-plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation (553 aa)
   
 
  0.981
psbH
Photosystem II reaction center protein H ; One of the components of the core complex of photosystem II (PSII), required for its stability and/or assembly. PSII is a light-driven water-plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation (73 aa)
   
 
  0.977
Solyc02g011990.1.1
Uncharacterized protein (261 aa)
   
 
  0.976
psbF
Cytochrome b559 subunit beta ; This b-type cytochrome is tightly associated with the reaction center of photosystem II (PSII). PSII is a light-driven water-plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation (39 aa)
   
 
  0.882
psbI
Photosystem II reaction center protein I (77 aa)
     
 
  0.864
psbM
Photosystem II reaction center protein M (62 aa)
       
 
  0.841
Solyc11g050770.1.1
Photosystem II reaction center protein Z ; Controls the interaction of photosystem II (PSII) cores with the light-harvesting antenna (81 aa)
     
 
  0.797
psbZ
Photosystem II reaction center protein Z ; Controls the interaction of photosystem II (PSII) cores with the light-harvesting antenna (62 aa)
     
 
  0.797
Solyc07g021240.1.1
Uncharacterized protein (169 aa)
   
   
  0.785
ycf4
Photosystem I assembly protein Ycf4 ; Seems to be required for the assembly of the photosystem I complex (184 aa)
 
   
  0.785
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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