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Solyc01g106090.2.1 Solyc01g106090.2.1 Solyc08g081590.1.1 Solyc08g081590.1.1 Solyc07g065440.2.1 Solyc07g065440.2.1 Solyc01g087500.2.1 Solyc01g087500.2.1 Solyc07g065430.2.1 Solyc07g065430.2.1 Solyc07g005240.2.1 Solyc07g005240.2.1 TOP6B TOP6B Solyc09g007210.2.1 Solyc09g007210.2.1 Solyc06g072340.2.1 Solyc06g072340.2.1 Solyc03g098620.2.1 Solyc03g098620.2.1 Solyc03g098150.2.1 Solyc03g098150.2.1
"TOP6B" - DNA topoisomerase 6 subunit B in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TOP6BDNA topoisomerase 6 subunit B ; Component of the DNA topoisomerase VI involved in chromatin organization and progression of endoreduplication cycles. Relaxes both positive and negative superturns and exhibits a strong decatenase activity. The B subunit binds ATP (672 aa)    
Predicted Functional Partners:
Solyc07g065430.2.1
Uncharacterized protein (383 aa)
 
 
 
  0.970
Solyc08g081590.1.1
Uncharacterized protein (251 aa)
 
 
 
  0.968
Solyc09g007210.2.1
Uncharacterized protein (268 aa)
 
 
 
  0.968
Solyc07g065440.2.1
Uncharacterized protein (147 aa)
     
 
  0.951
Solyc01g087500.2.1
DNA topoisomerase 2 ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1478 aa)
   
   
  0.620
Solyc03g098620.2.1
Uncharacterized protein (387 aa)
           
  0.489
Solyc07g005240.2.1
Uncharacterized protein (452 aa)
   
        0.457
Solyc06g072340.2.1
Uncharacterized protein (1211 aa)
     
   
  0.438
Solyc03g098150.2.1
Uncharacterized protein (1165 aa)
     
   
  0.438
Solyc01g106090.2.1
Uncharacterized protein (287 aa)
   
          0.426
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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