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Solyc02g062830.1.1 Solyc02g062830.1.1 Solyc04g048930.1.1 Solyc04g048930.1.1 Solyc04g081580.2.1 Solyc04g081580.2.1 Solyc09g009940.2.1 Solyc09g009940.2.1 Solyc08g082740.2.1 Solyc08g082740.2.1 Solyc02g062810.2.1 Solyc02g062810.2.1 Solyc01g047590.1.1 Solyc01g047590.1.1 LOC544156 LOC544156 Solyc03g116810.2.1 Solyc03g116810.2.1 Solyc02g062840.1.1 Solyc02g062840.1.1 Solyc03g093970.2.1 Solyc03g093970.2.1
"Solyc01g047590.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g047590.1.1Uncharacterized protein (404 aa)    
Predicted Functional Partners:
Solyc04g048930.1.1
Uncharacterized protein (81 aa)
     
  0.984
Solyc03g093970.2.1
Signal recognition particle subunit SRP68 ; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane (602 aa)
     
  0.984
Solyc02g062840.1.1
Uncharacterized protein (97 aa)
     
  0.984
Solyc02g062830.1.1
Uncharacterized protein (149 aa)
     
  0.984
Solyc02g062810.2.1
Signal recognition particle subunit SRP68 ; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane (602 aa)
     
  0.984
Solyc08g082740.2.1
Uncharacterized protein (213 aa)
     
  0.975
LOC544156
Signal recognition particle 54 kDa protein 2 ; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein) (499 aa)
     
  0.898
Solyc09g009940.2.1
Uncharacterized protein (567 aa)
     
  0.898
Solyc03g116810.2.1
Signal recognition particle 54 kDa protein 1 ; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein) (590 aa)
     
  0.898
Solyc04g081580.2.1
Uncharacterized protein (744 aa)
     
      0.800
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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