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Solyc07g042380.2.1 Solyc07g042380.2.1 Solyc03g120080.2.1 Solyc03g120080.2.1 Solyc11g020810.1.1 Solyc11g020810.1.1 Solyc11g020820.1.1 Solyc11g020820.1.1 Solyc03g062650.2.1 Solyc03g062650.2.1 Solyc09g014320.2.1 Solyc09g014320.2.1 Solyc10g046930.1.1 Solyc10g046930.1.1 Solyc01g068070.2.1 Solyc01g068070.2.1 Solyc04g015940.2.1 Solyc04g015940.2.1 Solyc05g012300.1.1 Solyc05g012300.1.1 Solyc05g012320.1.1 Solyc05g012320.1.1
"Solyc01g068070.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g068070.2.1Uncharacterized protein (1382 aa)    
Predicted Functional Partners:
Solyc09g014320.2.1
2’-O-ribose RNA methyltransferase TRM7 homolog ; Methylates the 2’-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs (316 aa)
     
 
  0.917
Solyc11g020820.1.1
2’-O-ribose RNA methyltransferase SPB1 homolog ; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits (817 aa)
     
 
  0.708
Solyc11g020810.1.1
2’-O-ribose RNA methyltransferase SPB1 homolog ; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits (829 aa)
     
 
  0.708
Solyc10g046930.1.1
Uncharacterized protein (766 aa)
     
 
  0.708
Solyc03g062650.2.1
Uncharacterized protein (2174 aa)
     
 
  0.630
Solyc03g120080.2.1
Uncharacterized protein (666 aa)
     
        0.507
Solyc07g042380.2.1
Uncharacterized protein (1248 aa)
     
        0.476
Solyc04g015940.2.1
Uncharacterized protein (1162 aa)
     
        0.476
Solyc05g012320.1.1
Uncharacterized protein (266 aa)
       
 
  0.449
Solyc05g012300.1.1
Uncharacterized protein (219 aa)
       
 
  0.449
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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