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Solyc12g088630.1.1 Solyc12g088630.1.1 Solyc12g088620.1.1 Solyc12g088620.1.1 Solyc12g088600.1.1 Solyc12g088600.1.1 Solyc12g088590.1.1 Solyc12g088590.1.1 Solyc01g094880.2.1 Solyc01g094880.2.1 Solyc12g088580.1.1 Solyc12g088580.1.1 UBI3 UBI3 Solyc03g078570.2.1 Solyc03g078570.2.1 Solyc01g088560.2.1 Solyc01g088560.2.1 Solyc11g019960.1.1 Solyc11g019960.1.1 Solyc05g051570.2.1 Solyc05g051570.2.1
"Solyc01g094880.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g094880.2.1Uncharacterized protein (1125 aa)    
Predicted Functional Partners:
Solyc05g051570.2.1
Uncharacterized protein (207 aa)
       
  0.963
Solyc03g078570.2.1
Uncharacterized protein (207 aa)
       
  0.963
Solyc01g088560.2.1
Uncharacterized protein (208 aa)
       
  0.963
UBI3
Ubiquitin-40S ribosomal protein S27a Ubiquitin 40S ribosomal protein S27a; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin tha [...] (156 aa)
       
      0.901
Solyc11g019960.1.1
Uncharacterized protein (494 aa)
       
  0.798
Solyc12g088630.1.1
Uncharacterized protein (511 aa)
       
      0.595
Solyc12g088620.1.1
Uncharacterized protein (522 aa)
       
      0.595
Solyc12g088600.1.1
Uncharacterized protein (84 aa)
       
      0.595
Solyc12g088590.1.1
Uncharacterized protein (83 aa)
       
      0.595
Solyc12g088580.1.1
Uncharacterized protein (110 aa)
       
      0.595
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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