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Solyc09g075900.2.1 Solyc09g075900.2.1 spdsyn spdsyn Solyc12g038970.1.1 Solyc12g038970.1.1 ODC ODC LOC543960 LOC543960 SPM1 SPM1 ARG2 ARG2 ARG1 ARG1 adc1 adc1 Solyc04g076320.2.1 Solyc04g076320.2.1 NOS1 NOS1
"LOC543960" - Arginine decarboxylase in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC543960Arginine decarboxylase (607 aa)    
Predicted Functional Partners:
ARG2
Arginase 2 (338 aa)
     
  0.981
ARG1
Arginase 1 (338 aa)
     
  0.981
Solyc12g038970.1.1
Uncharacterized protein (375 aa)
       
  0.955
NOS1
Nitric oxide synthase (560 aa)
         
    0.900
Solyc04g076320.2.1
Uncharacterized protein (525 aa)
         
  0.855
spdsyn
Spermidine synthase (342 aa)
       
  0.833
ODC
Ornithine decarboxylase (431 aa)
         
  0.813
adc1
Arginine decarboxylase (707 aa)
   
   
 
0.801
SPM1
Putative spermine synthase (356 aa)
       
  0.672
Solyc09g075900.2.1
Uncharacterized protein (331 aa)
       
  0.484
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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