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Solyc03g031650.2.1 Solyc03g031650.2.1 Solyc09g047840.2.1 Solyc09g047840.2.1 Solyc10g006270.2.1 Solyc10g006270.2.1 Solyc12g049310.1.1 Solyc12g049310.1.1 Solyc08g007400.2.1 Solyc08g007400.2.1 Solyc06g034160.2.1 Solyc06g034160.2.1 Solyc08g078820.2.1 Solyc08g078820.2.1 Solyc03g111740.2.1 Solyc03g111740.2.1 Solyc02g036380.2.1 Solyc02g036380.2.1 Solyc02g080590.2.1 Solyc02g080590.2.1 Solyc07g064680.2.1 Solyc07g064680.2.1
"Solyc02g036380.2.1" - Autophagy protein 5 in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc02g036380.2.1Autophagy protein 5 ; Required for autophagy (418 aa)    
Predicted Functional Partners:
Solyc03g111740.2.1
Uncharacterized protein (482 aa)
       
  0.997
Solyc12g049310.1.1
Ubiquitin-like protein ATG12 ; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation (90 aa)
       
  0.987
Solyc06g034160.2.1
Autophagy-related protein 3 (313 aa)
     
  0.985
Solyc09g047840.2.1
Uncharacterized protein (236 aa)
       
  0.954
Solyc10g006270.2.1
Autophagy-related protein (147 aa)
       
  0.900
Solyc08g078820.2.1
Autophagy 8f (198 aa)
       
  0.900
Solyc08g007400.2.1
Autophagy-related protein (119 aa)
       
  0.900
Solyc07g064680.2.1
Autophagy 8a (119 aa)
       
  0.900
Solyc03g031650.2.1
Autophagy-related protein (123 aa)
       
  0.900
Solyc02g080590.2.1
Autophagy-related protein (123 aa)
       
  0.900
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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