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Solyc02g085690.2.1 Solyc02g085690.2.1 Solyc12g089030.1.1 Solyc12g089030.1.1 Solyc10g039370.1.1 Solyc10g039370.1.1 Solyc02g070460.2.1 Solyc02g070460.2.1 LOC543616 LOC543616 cul4 cul4 Solyc09g074680.2.1 Solyc09g074680.2.1 Solyc06g073150.2.1 Solyc06g073150.2.1 Solyc02g088010.2.1 Solyc02g088010.2.1 RCE1 RCE1 Solyc06g007500.1.1 Solyc06g007500.1.1
"Solyc02g088010.2.1" - Defective in cullin neddylation protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc02g088010.2.1Defective in cullin neddylation protein (310 aa)    
Predicted Functional Partners:
Solyc12g089030.1.1
Uncharacterized protein (183 aa)
       
 
  0.867
Solyc10g039370.1.1
Uncharacterized protein (80 aa)
       
 
  0.867
Solyc06g007500.1.1
Uncharacterized protein (262 aa)
       
 
  0.867
RCE1
RUB1 conjugating enzyme (183 aa)
       
 
  0.867
Solyc02g085690.2.1
Uncharacterized protein (226 aa)
       
 
  0.867
LOC543616
CSN5 protein (367 aa)
     
 
  0.801
Solyc06g073150.2.1
Uncharacterized protein (367 aa)
     
 
  0.801
Solyc02g070460.2.1
Uncharacterized protein (802 aa)
     
 
  0.721
cul4
Cullin 4 (785 aa)
     
 
  0.721
Solyc09g074680.2.1
Uncharacterized protein (740 aa)
     
 
  0.721
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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