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Solyc12g077580.1.1 Solyc12g077580.1.1 Solyc11g072260.1.1 Solyc11g072260.1.1 Solyc03g019780.2.1 Solyc03g019780.2.1 Solyc06g072120.2.1 Solyc06g072120.2.1 Solyc10g018250.1.1 Solyc10g018250.1.1 UBI3 UBI3 rps3 rps3 Solyc11g021130.1.1 Solyc11g021130.1.1 Solyc03g083530.2.1 Solyc03g083530.2.1 Solyc03g097900.2.1 Solyc03g097900.2.1 Solyc05g051000.2.1 Solyc05g051000.2.1
"Solyc03g097900.2.1" - 40S ribosomal protein S3a in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc03g097900.2.140S ribosomal protein S3a (261 aa)    
Predicted Functional Partners:
rps3
30S ribosomal protein S3, chloroplastic (352 aa)
     
  0.999
Solyc11g021130.1.1
Ribosomal protein S7 (285 aa)
     
  0.999
UBI3
Ubiquitin-40S ribosomal protein S27a Ubiquitin 40S ribosomal protein S27a; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin tha [...] (156 aa)
   
  0.998
Solyc06g072120.2.1
40S ribosomal protein SA ; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits (296 aa)
   
  0.998
Solyc03g019780.2.1
40S ribosomal protein SA ; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits (298 aa)
   
  0.998
Solyc12g077580.1.1
Uncharacterized protein (132 aa)
   
  0.998
Solyc11g072260.1.1
Cytoplasmic ribosomal protein S13 (151 aa)
   
  0.998
Solyc10g018250.1.1
Cytoplasmic ribosomal protein S13 (151 aa)
   
  0.998
Solyc05g051000.2.1
Uncharacterized protein (151 aa)
   
  0.998
Solyc03g083530.2.1
Cytoplasmic ribosomal protein S13 (151 aa)
   
  0.998
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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