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Solyc09g009710.2.1 Solyc09g009710.2.1 Solyc11g018510.1.1 Solyc11g018510.1.1 Solyc11g018520.1.1 Solyc11g018520.1.1 Solyc06g073400.2.1 Solyc06g073400.2.1 Solyc09g018850.2.1 Solyc09g018850.2.1 Solyc03g111600.2.1 Solyc03g111600.2.1 Solyc09g083010.2.1 Solyc09g083010.2.1 pcna pcna Solyc09g005100.2.1 Solyc09g005100.2.1 Solyc07g062430.2.1 Solyc07g062430.2.1 Solyc03g031820.2.1 Solyc03g031820.2.1
"Solyc03g111600.2.1" - DNA-(apurinic or apyrimidinic site) lyase in Solanum lycopersicum
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
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Coexpression
Experiments
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Textmining
[Homology]
Score
Solyc03g111600.2.1DNA-(apurinic or apyrimidinic site) lyase (377 aa)    
Predicted Functional Partners:
Solyc09g005100.2.1
Uncharacterized protein (746 aa)
     
 
  0.951
pcna
Proliferating cell nuclear antigen ; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (264 aa)
     
  0.947
Solyc09g018850.2.1
Uncharacterized protein (476 aa)
       
  0.937
Solyc03g031820.2.1
Uncharacterized protein (645 aa)
     
 
  0.934
Solyc07g062430.2.1
Uncharacterized protein (343 aa)
   
  0.925
Solyc09g083010.2.1
Bifunctional DNA N-glycoslyase/DNA-(apurinic or apyrimidinic site) lyase ; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N- glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3’ to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines (239 aa)
     
  0.896
Solyc06g073400.2.1
Bifunctional DNA N-glycoslyase/DNA-(apurinic or apyrimidinic site) lyase ; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N- glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3’ to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines (380 aa)
     
  0.896
Solyc11g018520.1.1
Uncharacterized protein (240 aa)
   
  0.846
Solyc11g018510.1.1
Uncharacterized protein (60 aa)
   
  0.846
Solyc09g009710.2.1
Uncharacterized protein (905 aa)
     
  0.812
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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