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ctd1 ctd1 Solyc03g098470.2.1 Solyc03g098470.2.1 LYR LYR Solyc06g072280.2.1 Solyc06g072280.2.1 Solyc09g009250.2.1 Solyc09g009250.2.1 ats1 ats1
"LYR" - Lyrate in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LYRLyrate (332 aa)    
Predicted Functional Partners:
ats1
Putative asparaginyl-tRNA synthetase (580 aa)
           
  0.519
Solyc06g072280.2.1
Uncharacterized protein (88 aa)
           
  0.479
Solyc03g098470.2.1
Uncharacterized protein (88 aa)
           
  0.479
ctd1
AUX/IAA protein; Entire; IAA9 ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (349 aa)
           
  0.467
Solyc09g009250.2.1
Uncharacterized protein (543 aa)
           
  0.452
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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