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Solyc02g084700.2.1 Solyc02g084700.2.1 Solyc10g045190.1.1 Solyc10g045190.1.1 Solyc01g109970.2.1 Solyc01g109970.2.1 RPD1 RPD1 Solyc03g114140.2.1 Solyc03g114140.2.1 Solyc06g051990.2.1 Solyc06g051990.2.1 Solyc11g008150.1.1 Solyc11g008150.1.1 Solyc09g065510.2.1 Solyc09g065510.2.1 RPE1 RPE1 Solyc03g120940.2.1 Solyc03g120940.2.1 Solyc01g099300.2.1 Solyc01g099300.2.1
"Solyc06g051990.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc06g051990.2.1Uncharacterized protein (467 aa)    
Predicted Functional Partners:
Solyc10g045190.1.1
Uncharacterized protein (119 aa)
       
 
  0.806
RPE1
DNA-directed RNA polymerase V subunit 1; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1678 aa)
     
 
  0.783
Solyc01g109970.2.1
Uncharacterized protein (907 aa)
     
 
  0.623
Solyc02g084700.2.1
Uncharacterized protein (644 aa)
     
 
  0.551
Solyc01g099300.2.1
Uncharacterized protein (713 aa)
     
 
  0.551
Solyc03g114140.2.1
Uncharacterized protein (1119 aa)
     
   
  0.522
Solyc09g065510.2.1
Uncharacterized protein (170 aa)
       
 
  0.511
Solyc11g008150.1.1
Uncharacterized protein (1509 aa)
     
   
  0.511
RPD1
DNA-directed RNA polymerase ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1206 aa)
     
 
  0.470
Solyc03g120940.2.1
Uncharacterized protein (304 aa)
           
  0.461
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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