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STRINGSTRING
Solyc03g095770.2.1 Solyc03g095770.2.1 SlDRW1 SlDRW1 Solyc09g014990.2.1 Solyc09g014990.2.1 Solyc06g068460.2.1 Solyc06g068460.2.1 Solyc04g015750.2.1 Solyc04g015750.2.1 WRKY3 WRKY3
"Solyc06g068460.2.1" - WRKY transcription factor 1 in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc06g068460.2.1WRKY transcription factor 1 (360 aa)    
Predicted Functional Partners:
SlDRW1
Defense-related WRKY1 (535 aa)
     
   
0.461
Solyc09g014990.2.1
Uncharacterized protein (529 aa)
     
   
0.458
Solyc04g015750.2.1
Uncharacterized protein (1381 aa)
       
 
  0.428
WRKY3
WRKY transcription factor (336 aa)
     
   
0.420
Solyc03g095770.2.1
Uncharacterized protein (273 aa)
     
   
  0.406
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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