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Solyc12g044730.1.1 Solyc12g044730.1.1 Solyc03g121370.2.1 Solyc03g121370.2.1 Solyc11g021130.1.1 Solyc11g021130.1.1 Solyc08g074240.2.1 Solyc08g074240.2.1 Solyc08g006040.2.1 Solyc08g006040.2.1 Solyc12g096300.1.1 Solyc12g096300.1.1 Solyc03g019780.2.1 Solyc03g019780.2.1 Solyc06g072120.2.1 Solyc06g072120.2.1 rps8 rps8 Solyc04g058060.1.1 Solyc04g058060.1.1 ArcA1 ArcA1
"ArcA1" - LeArcA1 protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ArcA1LeArcA1 protein (326 aa)    
Predicted Functional Partners:
Solyc11g021130.1.1
Ribosomal protein S7 (285 aa)
     
 
  0.998
Solyc12g044730.1.1
Uncharacterized protein (131 aa)
     
 
  0.994
Solyc04g058060.1.1
Uncharacterized protein (436 aa)
     
 
  0.994
Solyc03g121370.2.1
Uncharacterized protein (129 aa)
     
 
  0.994
rps8
30S ribosomal protein S8, chloroplastic ; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit (134 aa)
     
 
  0.994
Solyc06g072120.2.1
40S ribosomal protein SA ; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits (296 aa)
     
 
  0.994
Solyc03g019780.2.1
40S ribosomal protein SA ; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits (298 aa)
     
 
  0.994
Solyc12g096300.1.1
40S ribosomal protein S6 (249 aa)
     
 
  0.994
Solyc08g074240.2.1
40S ribosomal protein S6 (249 aa)
     
 
  0.994
Solyc08g006040.2.1
40S ribosomal protein S6 (249 aa)
     
 
  0.994
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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