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Solyc07g047610.2.1 Solyc07g047610.2.1 Solyc10g045400.1.1 Solyc10g045400.1.1 Solyc04g010090.2.1 Solyc04g010090.2.1 Solyc02g093490.2.1 Solyc02g093490.2.1 Solyc12g096470.1.1 Solyc12g096470.1.1 Solyc10g006100.2.1 Solyc10g006100.2.1 Solyc06g065700.2.1 Solyc06g065700.2.1 Solyc05g054200.2.1 Solyc05g054200.2.1 Solyc07g007640.1.1 Solyc07g007640.1.1 Solyc06g082160.2.1 Solyc06g082160.2.1 SUS1 SUS1
"Solyc07g007640.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc07g007640.1.1Uncharacterized protein (237 aa)    
Predicted Functional Partners:
Solyc06g082160.2.1
SAGA-associated factor 11 (336 aa)
       
  0.970
Solyc02g093490.2.1
Uncharacterized protein (268 aa)
     
  0.970
Solyc10g045400.1.1
Uncharacterized protein (404 aa)
     
  0.969
Solyc04g010090.2.1
Uncharacterized protein (161 aa)
     
  0.963
Solyc12g096470.1.1
Uncharacterized protein (138 aa)
       
  0.957
Solyc07g047610.2.1
Uncharacterized protein (560 aa)
     
  0.939
Solyc05g054200.2.1
Uncharacterized protein (543 aa)
     
  0.939
Solyc06g065700.2.1
Uncharacterized protein (685 aa)
     
  0.936
SUS1
Transcription and mRNA export factor SUS1 ; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...] (71 aa)
       
  0.921
Solyc10g006100.2.1
Uncharacterized protein (547 aa)
     
  0.892
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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