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Solyc09g063020.2.1 Solyc09g063020.2.1 Solyc01g098900.2.1 Solyc01g098900.2.1 Solyc07g005670.1.1 Solyc07g005670.1.1 Solyc07g018220.2.1 Solyc07g018220.2.1 Solyc11g007080.1.1 Solyc11g007080.1.1 Solyc00g042130.1.1 Solyc00g042130.1.1 Solyc05g055300.1.1 Solyc05g055300.1.1 Solyc05g052930.2.1 Solyc05g052930.2.1 Solyc06g073270.2.1 Solyc06g073270.2.1 Solyc06g083630.2.1 Solyc06g083630.2.1
"Solyc07g018220.2.1" - Protein YIPF in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc07g018220.2.1Protein YIPF (278 aa)    
Predicted Functional Partners:
Solyc05g052930.2.1
Protein YIPF (265 aa)
     
 
  0.943
Solyc01g098900.2.1
Protein YIPF (280 aa)
     
 
  0.943
Solyc06g073270.2.1
Golgi apparatus membrane protein TVP23 ; Golgi membrane protein involved in vesicular trafficking (183 aa)
     
 
  0.783
Solyc11g007080.1.1
Protein YIPF (252 aa)
       
 
  0.742
Solyc05g055300.1.1
Protein YIPF (251 aa)
       
 
  0.742
Solyc09g063020.2.1
Uncharacterized protein (344 aa)
     
 
  0.721
Solyc07g005670.1.1
Uncharacterized protein (272 aa)
     
 
  0.721
Solyc06g083630.2.1
Uncharacterized protein (293 aa)
     
 
  0.721
Solyc00g042130.1.1
Annotation not available (704 aa)
       
      0.695
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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