Full Link:
STRINGSTRING
H2B-1 H2B-1 HTA6 HTA6 Solyc01g106390.2.1 Solyc01g106390.2.1 Solyc08g069030.2.1 Solyc08g069030.2.1 Solyc07g066470.2.1 Solyc07g066470.2.1 Solyc01g086650.2.1 Solyc01g086650.2.1 Solyc10g007320.2.1 Solyc10g007320.2.1 Solyc01g089840.2.1 Solyc01g089840.2.1 LOC543967 LOC543967 Solyc06g048730.2.1 Solyc06g048730.2.1 Solyc02g068350.1.1 Solyc02g068350.1.1
"Solyc08g069030.2.1" - Delta-aminolevulinic acid dehydratase in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc08g069030.2.1Delta-aminolevulinic acid dehydratase (430 aa)    
Predicted Functional Partners:
Solyc07g066470.2.1
Uncharacterized protein (365 aa)
 
  0.991
LOC543967
Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic (482 aa)
 
 
  0.989
Solyc02g068350.1.1
Uncharacterized protein (312 aa)
   
  0.960
Solyc01g086650.2.1
Uncharacterized protein (376 aa)
 
 
  0.891
Solyc06g048730.2.1
Uroporphyrinogen decarboxylase (388 aa)
 
 
  0.853
Solyc10g007320.2.1
Uroporphyrinogen decarboxylase (420 aa)
 
 
  0.850
Solyc01g106390.2.1
Glutamyl-tRNA reductase (552 aa)
 
 
  0.822
Solyc01g089840.2.1
Uncharacterized protein (131 aa)
 
 
  0.717
HTA6
Histone H2A.1 ; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling (146 aa)
           
  0.699
H2B-1
Histone H2B.1 ; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling (142 aa)
           
  0.696
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (1%)