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Solyc11g008540.1.1 Solyc11g008540.1.1 Solyc06g054020.2.1 Solyc06g054020.2.1 DCL1 DCL1 Solyc06g048960.2.1 Solyc06g048960.2.1 Solyc11g008530.1.1 Solyc11g008530.1.1 Solyc08g075820.2.1 Solyc08g075820.2.1 SGS3 SGS3 Solyc11g008520.1.1 Solyc11g008520.1.1 Solyc07g005030.2.1 Solyc07g005030.2.1 Solyc06g054050.1.1 Solyc06g054050.1.1 DCL3 DCL3
"Solyc08g075820.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc08g075820.2.1Uncharacterized protein (1179 aa)    
Predicted Functional Partners:
SGS3
Protein SUPPRESSOR OF GENE SILENCING 3 ; Required for post-transcriptional gene silencing and natural virus resistance (633 aa)
     
 
  0.816
Solyc11g008520.1.1
Uncharacterized protein (1428 aa)
     
 
  0.803
Solyc06g048960.2.1
Uncharacterized protein (1399 aa)
     
 
  0.803
Solyc07g005030.2.1
Uncharacterized protein (1536 aa)
     
 
  0.803
DCL1
Endoribonuclease Dicer homolog 1 (1888 aa)
     
 
  0.801
Solyc11g008540.1.1
Uncharacterized protein (1352 aa)
     
 
  0.589
Solyc11g008530.1.1
Uncharacterized protein (1317 aa)
     
 
  0.589
DCL3
Endoribonuclease Dicer homolog 3a (1430 aa)
     
 
  0.587
Solyc06g054050.1.1
Uncharacterized protein (911 aa)
       
 
  0.558
Solyc06g054020.2.1
Uncharacterized protein (956 aa)
       
 
  0.558
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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