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Solyc07g005930.2.1 Solyc07g005930.2.1 Solyc03g118610.2.1 Solyc03g118610.2.1 Solyc05g010660.2.1 Solyc05g010660.2.1 Solyc02g089330.2.1 Solyc02g089330.2.1 Solyc09g007320.2.1 Solyc09g007320.2.1 Solyc02g089340.2.1 Solyc02g089340.2.1 petD petD petB petB psbB psbB Solyc04g009020.2.1 Solyc04g009020.2.1 psbH psbH
"Solyc09g007320.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc09g007320.2.1Uncharacterized protein (692 aa)    
Predicted Functional Partners:
petD
Cytochrome b6-f complex subunit 4 ; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions (139 aa)
       
 
  0.506
psbH
Photosystem II reaction center protein H ; One of the components of the core complex of photosystem II (PSII), required for its stability and/or assembly. PSII is a light-driven water-plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation (73 aa)
           
  0.489
petB
Cytochrome b6 ; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions (213 aa)
       
 
  0.475
psbB
Photosystem II CP47 chlorophyll apoprotein ; One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light-induced photochemical processes of PSII. PSII is a light- driven water-plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation (553 aa)
           
  0.459
Solyc04g009020.2.1
Uncharacterized protein (681 aa)
           
  0.454
Solyc03g118610.2.1
Uncharacterized protein (386 aa)
     
   
  0.440
Solyc07g005930.2.1
DNA-directed RNA polymerase ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (992 aa)
     
 
  0.435
Solyc05g010660.2.1
DNA-directed RNA polymerase ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (993 aa)
     
 
  0.435
Solyc02g089340.2.1
DNA-directed RNA polymerase ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (711 aa)
     
 
  0.435
Solyc02g089330.2.1
Uncharacterized protein (314 aa)
     
 
  0.435
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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