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Solyc11g042930.1.1 Solyc11g042930.1.1 Solyc11g008400.1.1 Solyc11g008400.1.1 Solyc11g008420.1.1 Solyc11g008420.1.1 Solyc10g055580.1.1 Solyc10g055580.1.1 Solyc09g074520.2.1 Solyc09g074520.2.1 SSK3 SSK3 IAA3 IAA3 IAA7 IAA7 Solyc03g120380.2.1 Solyc03g120380.2.1 Solyc09g083290.2.1 Solyc09g083290.2.1 SKP1 SKP1
"Solyc09g074520.2.1" - TIR1-like protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc09g074520.2.1TIR1-like protein (581 aa)    
Predicted Functional Partners:
Solyc03g120380.2.1
IAA19 ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (192 aa)
       
  0.916
IAA3
IAA3 ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (185 aa)
       
  0.898
Solyc11g042930.1.1
Uncharacterized protein (155 aa)
       
  0.893
Solyc10g055580.1.1
Uncharacterized protein (150 aa)
       
  0.893
Solyc09g083290.2.1
IAA14 ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (236 aa)
       
  0.890
IAA7
IAA7 ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (218 aa)
       
  0.890
SKP1
S-phase kinase-associated protein 1 (EC-3.1.1.3) (156 aa)
       
  0.886
Solyc11g008420.1.1
Uncharacterized protein (189 aa)
       
  0.883
Solyc11g008400.1.1
Uncharacterized protein (180 aa)
       
  0.883
SSK3
SKP1-like protein 11-like (158 aa)
       
  0.883
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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