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Solyc11g005110.1.1 Solyc11g005110.1.1 Solyc11g006820.1.1 Solyc11g006820.1.1 Solyc06g082360.2.1 Solyc06g082360.2.1 Solyc09g075200.2.1 Solyc09g075200.2.1 Solyc01g067830.2.1 Solyc01g067830.2.1 Solyc09g098390.2.1 Solyc09g098390.2.1 Solyc01g100990.2.1 Solyc01g100990.2.1 LOC778316 LOC778316 Solyc11g044340.1.1 Solyc11g044340.1.1 Solyc09g075130.2.1 Solyc09g075130.2.1 Solyc07g022760.2.1 Solyc07g022760.2.1
"Solyc09g098390.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc09g098390.2.1Uncharacterized protein (355 aa)    
Predicted Functional Partners:
Solyc11g005110.1.1
Uncharacterized protein (523 aa)
     
  0.982
Solyc09g075130.2.1
Uncharacterized protein (109 aa)
       
  0.978
Solyc01g100990.2.1
Uncharacterized protein (150 aa)
     
  0.976
LOC778316
Similar to u1 small nuclear ribonucleoprotein C ; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5’ splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5’ splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5’ splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates E complex formation by stabilizing the base pairing of the 5’ end of the U1 snRNA and the 5’ splice-site region (197 aa)
     
  0.976
Solyc01g067830.2.1
U1 small nuclear ribonucleoprotein C ; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5’ splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5’ splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5’ splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates E complex formation by stabilizing the base pairing of the 5’ end of the U1 snRNA and the 5’ splice-site region (199 aa)
     
  0.976
Solyc09g075200.2.1
Uncharacterized protein (253 aa)
     
  0.976
Solyc06g082360.2.1
Uncharacterized protein (233 aa)
     
  0.976
Solyc11g044340.1.1
Uncharacterized protein (784 aa)
     
  0.975
Solyc07g022760.2.1
Uncharacterized protein (1023 aa)
     
  0.975
Solyc11g006820.1.1
Uncharacterized protein (81 aa)
       
  0.975
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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