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Solyc10g049450.1.1 Solyc10g049450.1.1 Solyc00g027770.2.1 Solyc00g027770.2.1 Solyc01g090130.1.1 Solyc01g090130.1.1 Solyc10g052730.1.1 Solyc10g052730.1.1
"Solyc10g049450.1.1" - Pectinesterase in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc10g049450.1.1Pectinesterase (113 aa)    
Predicted Functional Partners:
Solyc01g090130.1.1
Pectinesterase (127 aa)
   
          0.443
Solyc10g052730.1.1
Pectinesterase (171 aa)
   
          0.429
Solyc00g027770.2.1
Annotation not available (317 aa)
   
          0.406
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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