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Solyc02g083230.2.1 Solyc02g083230.2.1 RPD1 RPD1 Solyc12g035870.1.1 Solyc12g035870.1.1 Solyc12g088030.1.1 Solyc12g088030.1.1 Solyc10g079990.1.1 Solyc10g079990.1.1 Solyc11g012150.1.1 Solyc11g012150.1.1 RPE1 RPE1 Solyc01g028930.2.1 Solyc01g028930.2.1 Solyc05g010300.2.1 Solyc05g010300.2.1 RPB1 RPB1 Solyc02g083240.2.1 Solyc02g083240.2.1
"Solyc10g079990.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc10g079990.1.1Uncharacterized protein (192 aa)    
Predicted Functional Partners:
Solyc01g028930.2.1
Uncharacterized protein (203 aa)
     
  0.980
Solyc02g083230.2.1
DNA-directed RNA polymerase subunit ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (264 aa)
   
  0.979
Solyc12g035870.1.1
Uncharacterized protein (398 aa)
     
  0.978
Solyc05g010300.2.1
Uncharacterized protein (319 aa)
     
  0.977
RPE1
DNA-directed RNA polymerase V subunit 1; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1678 aa)
     
  0.976
Solyc11g012150.1.1
Uncharacterized protein (500 aa)
     
  0.975
Solyc12g088030.1.1
Transcription initiation factor IIA subunit 2 ; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation (106 aa)
       
  0.975
RPD1
DNA-directed RNA polymerase ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1206 aa)
     
  0.973
RPB1
DNA-directed RNA polymerase ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1846 aa)
     
  0.973
Solyc02g083240.2.1
Uncharacterized protein (115 aa)
     
  0.973
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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