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Solyc03g095720.2.1 Solyc03g095720.2.1 Solyc06g066320.2.1 Solyc06g066320.2.1 Solyc11g008150.1.1 Solyc11g008150.1.1 Solyc04g008750.2.1 Solyc04g008750.2.1 RPD1 RPD1 Solyc10g081020.1.1 Solyc10g081020.1.1 RPE1 RPE1 Solyc12g035870.1.1 Solyc12g035870.1.1 Solyc04g064700.2.1 Solyc04g064700.2.1 Solyc05g052190.2.1 Solyc05g052190.2.1 Solyc06g010200.2.1 Solyc06g010200.2.1
"Solyc10g081020.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc10g081020.1.1Uncharacterized protein (1642 aa)    
Predicted Functional Partners:
Solyc06g066320.2.1
COSII_At1g32130 (523 aa)
     
 
  0.990
Solyc11g008150.1.1
Uncharacterized protein (1509 aa)
     
 
  0.972
Solyc04g064700.2.1
Transcription elongation factor SPT5 (1040 aa)
     
 
  0.972
Solyc04g008750.2.1
Transcription elongation factor SPT4 homolog ; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex (116 aa)
       
 
  0.946
Solyc05g052190.2.1
Uncharacterized protein (401 aa)
       
 
  0.887
Solyc03g095720.2.1
Uncharacterized protein (381 aa)
       
 
  0.887
RPE1
DNA-directed RNA polymerase V subunit 1; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1678 aa)
     
 
  0.856
Solyc06g010200.2.1
Uncharacterized protein (1613 aa)
   
 
  0.851
Solyc12g035870.1.1
Uncharacterized protein (398 aa)
     
 
  0.843
RPD1
DNA-directed RNA polymerase ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1206 aa)
     
 
  0.834
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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