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Solyc10g007390.2.1 Solyc10g007390.2.1 Solyc02g072130.2.1 Solyc02g072130.2.1 Solyc07g006520.2.1 Solyc07g006520.2.1 Solyc08g065970.2.1 Solyc08g065970.2.1 Solyc11g005020.1.1 Solyc11g005020.1.1 Solyc09g008040.2.1 Solyc09g008040.2.1 Solyc01g087500.2.1 Solyc01g087500.2.1 Solyc03g007370.2.1 Solyc03g007370.2.1 Solyc01g081490.2.1 Solyc01g081490.2.1 Solyc09g065120.2.1 Solyc09g065120.2.1 Solyc06g072710.2.1 Solyc06g072710.2.1
"Solyc11g005020.1.1" - Protein translocase subunit SecA in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc11g005020.1.1Protein translocase subunit SecA (1011 aa)    
Predicted Functional Partners:
Solyc09g065120.2.1
Uncharacterized protein (576 aa)
   
 
  0.946
Solyc07g006520.2.1
Uncharacterized protein (536 aa)
   
 
  0.936
Solyc10g007390.2.1
Uncharacterized protein (475 aa)
   
 
  0.927
Solyc02g072130.2.1
Uncharacterized protein (475 aa)
   
 
  0.927
Solyc01g087500.2.1
DNA topoisomerase 2 ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1478 aa)
     
 
  0.895
Solyc09g008040.2.1
Uncharacterized protein (563 aa)
 
 
  0.783
Solyc01g081490.2.1
Uncharacterized protein (613 aa)
 
 
  0.765
Solyc03g007370.2.1
Uncharacterized protein (515 aa)
 
 
  0.764
Solyc06g072710.2.1
Uncharacterized protein (505 aa)
 
 
  0.755
Solyc08g065970.2.1
Uncharacterized protein (551 aa)
 
 
  0.753
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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