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Solyc01g099670.2.1 Solyc01g099670.2.1 Solyc12g096540.1.1 Solyc12g096540.1.1 Solyc06g007470.2.1 Solyc06g007470.2.1 Solyc12g039120.1.1 Solyc12g039120.1.1 Solyc11g006690.1.1 Solyc11g006690.1.1 UBI3 UBI3 rps3 rps3 Solyc11g021130.1.1 Solyc11g021130.1.1 Solyc04g008810.2.1 Solyc04g008810.2.1 Solyc03g115360.2.1 Solyc03g115360.2.1 Solyc04g049260.1.1 Solyc04g049260.1.1
"Solyc11g006690.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc11g006690.1.1Uncharacterized protein (144 aa)    
Predicted Functional Partners:
Solyc11g021130.1.1
Ribosomal protein S7 (285 aa)
     
  0.999
rps3
30S ribosomal protein S3, chloroplastic (352 aa)
     
  0.999
UBI3
Ubiquitin-40S ribosomal protein S27a Ubiquitin 40S ribosomal protein S27a; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin tha [...] (156 aa)
   
  0.999
Solyc06g007470.2.1
Uncharacterized protein (127 aa)
     
  0.998
Solyc04g008810.2.1
Uncharacterized protein (128 aa)
     
  0.998
Solyc12g039120.1.1
Uncharacterized protein (143 aa)
   
  0.998
Solyc03g115360.2.1
Uncharacterized protein (143 aa)
   
  0.998
Solyc12g096540.1.1
Uncharacterized protein (180 aa)
     
  0.998
Solyc01g099670.2.1
Uncharacterized protein (182 aa)
     
  0.998
Solyc04g049260.1.1
Uncharacterized protein (166 aa)
     
  0.998
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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