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Solyc08g066050.2.1 Solyc08g066050.2.1 Solyc01g087500.2.1 Solyc01g087500.2.1 Solyc01g096680.2.1 Solyc01g096680.2.1 Solyc12g095870.1.1 Solyc12g095870.1.1 Solyc05g005790.2.1 Solyc05g005790.2.1 Solyc12g005480.1.1 Solyc12g005480.1.1 Solyc08g041890.2.1 Solyc08g041890.2.1 Solyc02g087040.1.1 Solyc02g087040.1.1 Solyc01g060470.2.1 Solyc01g060470.2.1
"Solyc12g005480.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc12g005480.1.1Uncharacterized protein (743 aa)    
Predicted Functional Partners:
Solyc12g095870.1.1
Uncharacterized protein (295 aa)
     
   
  0.531
Solyc05g005790.2.1
Uncharacterized protein (472 aa)
     
   
  0.505
Solyc02g087040.1.1
Uncharacterized protein (390 aa)
     
   
  0.505
Solyc08g066050.2.1
Uncharacterized protein (303 aa)
     
   
  0.496
Solyc01g087500.2.1
DNA topoisomerase 2 ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1478 aa)
     
        0.470
Solyc08g041890.2.1
Importin subunit alpha (577 aa)
       
      0.463
Solyc01g060470.2.1
Importin subunit alpha (530 aa)
       
      0.463
Solyc01g096680.2.1
Uncharacterized protein (569 aa)
     
   
  0.415
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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