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Solyc04g071990.2.1 Solyc04g071990.2.1 Solyc12g095900.1.1 Solyc12g095900.1.1 Solyc12g056650.1.1 Solyc12g056650.1.1 LOC543596 LOC543596 COP1 COP1 phyA phyA LOC544219 LOC544219 Solyc10g011690.2.1 Solyc10g011690.2.1 Det1 Det1 Solyc08g081990.2.1 Solyc08g081990.2.1 HY5 HY5
COP1 homolog in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COP1COP1 homolog (677 aa)    
Predicted Functional Partners:
HY5
Transcription factor HY5 ; Transcription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light- induced genes (158 aa)
     
  0.998
Det1
Light-mediated development protein DET1 ; Component of light signal transduction machinery. Involved in fruit pigmentation and fruit nutritional quality. Acts as a negative regulator of fruit pigmentation. Probably acts by participating in the CDD complex, a complex probably required to regulate the activity of ubiquitin conjugating enzymes. Repression of photomorphogenesis is probably mediated by ubiquitination and subsequent degradation of photomorphogenesis-promoting factors such as HY5 (523 aa)
     
  0.982
LOC543596
Cryptochrome 2 (635 aa)
       
  0.950
LOC544219
Cryptochrome 1 (679 aa)
       
  0.950
phyA
Phytochrome ; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light- the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region (1123 aa)
     
 
  0.947
Solyc10g011690.2.1
Uncharacterized protein (1019 aa)
     
0.908
Solyc08g081990.2.1
Uncharacterized protein (1052 aa)
     
0.908
Solyc12g056650.1.1
Uncharacterized protein (1167 aa)
       
  0.893
Solyc04g071990.2.1
Uncharacterized protein (1167 aa)
       
  0.893
Solyc12g095900.1.1
Uncharacterized protein (722 aa)
       
  0.887
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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