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STRINGSTRING
chMDH chMDH Solyc12g014180.1.1 Solyc12g014180.1.1 Solyc09g090140.2.1 Solyc09g090140.2.1 Solyc09g091070.1.1 Solyc09g091070.1.1 mdh mdh ppc1 ppc1 cMDH cMDH Solyc01g080460.2.1 Solyc01g080460.2.1 mMDH mMDH Solyc03g115990.1.1 Solyc03g115990.1.1 Solyc03g083440.2.1 Solyc03g083440.2.1
"ppc1" - Phosphoenolpyruvate carboxylase 1 in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppc1Phosphoenolpyruvate carboxylase 1 (965 aa)    
Predicted Functional Partners:
Solyc01g080460.2.1
Uncharacterized protein (965 aa)
         
  0.956
mdh
Malate dehydrogenase (442 aa)
         
  0.953
Solyc09g090140.2.1
Malate dehydrogenase (332 aa)
         
  0.953
chMDH
Chloroplast malate dehydrogenase (467 aa)
         
  0.953
cMDH
Malate dehydrogenase (334 aa)
         
  0.953
Solyc03g083440.2.1
Uncharacterized protein (2226 aa)
     
 
  0.953
Solyc12g014180.1.1
Malate dehydrogenase (342 aa)
         
  0.948
Solyc09g091070.1.1
Malate dehydrogenase (298 aa)
         
  0.948
mMDH
Malate dehydrogenase (346 aa)
         
  0.948
Solyc03g115990.1.1
Uncharacterized protein (412 aa)
         
  0.948
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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