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Solyc07g042380.2.1 Solyc07g042380.2.1 Solyc03g097160.2.1 Solyc03g097160.2.1 Solyc05g055350.2.1 Solyc05g055350.2.1 Solyc05g011990.2.1 Solyc05g011990.2.1 Solyc10g079670.1.1 Solyc10g079670.1.1 Solyc01g087670.2.1 Solyc01g087670.2.1 Solyc03g113140.2.1 Solyc03g113140.2.1 Solyc12g044370.1.1 Solyc12g044370.1.1 Solyc03g120470.2.1 Solyc03g120470.2.1 Solyc04g015940.2.1 Solyc04g015940.2.1 POLR1B POLR1B
"Solyc12g044370.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc12g044370.1.1Uncharacterized protein (830 aa)    
Predicted Functional Partners:
Solyc05g055350.2.1
Uncharacterized protein (361 aa)
         
  0.896
Solyc03g113140.2.1
Uncharacterized protein (301 aa)
         
  0.871
Solyc03g097160.2.1
Uncharacterized protein (871 aa)
     
        0.831
Solyc10g079670.1.1
Uncharacterized protein (754 aa)
         
 
0.800
Solyc03g120470.2.1
MIP (1264 aa)
         
 
0.800
Solyc07g042380.2.1
Uncharacterized protein (1248 aa)
     
        0.730
Solyc05g011990.2.1
Uncharacterized protein (940 aa)
     
        0.730
Solyc04g015940.2.1
Uncharacterized protein (1162 aa)
     
        0.730
Solyc01g087670.2.1
Uncharacterized protein (907 aa)
     
        0.730
POLR1B
Probable DNA-directed RNA polymerase I subunit RPA2; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1096 aa)
     
   
  0.702
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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