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Solyc00g170510.1.1 Solyc00g170510.1.1 Solyc12g099410.1.1 Solyc12g099410.1.1 Solyc10g049370.1.1 Solyc10g049370.1.1 Solyc06g084620.1.1 Solyc06g084620.1.1 Solyc05g054360.2.1 Solyc05g054360.2.1 Solyc12g044750.1.1 Solyc12g044750.1.1 Solyc02g062150.1.1 Solyc02g062150.1.1 Solyc00g023470.1.1 Solyc00g023470.1.1 Solyc01g099950.1.1 Solyc01g099950.1.1 Solyc01g099940.2.1 Solyc01g099940.2.1 Solyc01g091050.2.1 Solyc01g091050.2.1
"Solyc12g044750.1.1" - Pectate lyase in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc12g044750.1.1Pectate lyase (382 aa)    
Predicted Functional Partners:
Solyc00g023470.1.1
Annotation not available (348 aa)
 
   
  0.936
Solyc01g091050.2.1
Pectinesterase ; Acts in the modification of cell walls via demethylesterification of cell wall pectin (524 aa)
 
   
  0.936
Solyc05g054360.2.1
Pectinesterase ; Acts in the modification of cell walls via demethylesterification of cell wall pectin (627 aa)
 
 
  0.936
Solyc02g062150.1.1
Pectinesterase (351 aa)
 
   
  0.935
Solyc00g170510.1.1
Annotation not available (292 aa)
 
   
  0.935
Solyc12g099410.1.1
Pectinesterase ; Acts in the modification of cell walls via demethylesterification of cell wall pectin (559 aa)
 
 
  0.935
Solyc10g049370.1.1
Pectinesterase (346 aa)
 
   
  0.935
Solyc06g084620.1.1
Pectinesterase (564 aa)
 
   
  0.935
Solyc01g099940.2.1
Pectinesterase (456 aa)
 
 
  0.935
Solyc01g099950.1.1
Pectinesterase (520 aa)
 
   
  0.935
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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