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STRINGSTRING
Solyc12g017630.1.1 Solyc12g017630.1.1 Solyc06g069140.1.1 Solyc06g069140.1.1 Solyc01g008270.2.1 Solyc01g008270.2.1 Solyc12g088960.1.1 Solyc12g088960.1.1 Solyc11g068670.1.1 Solyc11g068670.1.1 Solyc01g009380.2.1 Solyc01g009380.2.1
"Solyc12g088960.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc12g088960.1.1Uncharacterized protein (230 aa)    
Predicted Functional Partners:
Solyc01g008270.2.1
Uncharacterized protein (147 aa)
     
        0.718
Solyc12g017630.1.1
Uncharacterized protein (278 aa)
     
        0.682
Solyc06g069140.1.1
Uncharacterized protein (121 aa)
     
        0.682
Solyc11g068670.1.1
Uncharacterized protein (564 aa)
           
  0.404
Solyc01g009380.2.1
Uncharacterized protein (565 aa)
           
  0.404
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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