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PGSC0003DMT400022131 PGSC0003DMT400022131 PGSC0003DMT400050379 PGSC0003DMT400050379 PGSC0003DMT400047280 PGSC0003DMT400047280 PGSC0003DMT400073562 PGSC0003DMT400073562 PGSC0003DMT400037674 PGSC0003DMT400037674 PGSC0003DMT400000359 PGSC0003DMT400000359 PGSC0003DMT400016981 PGSC0003DMT400016981 PGSC0003DMT400033560 PGSC0003DMT400033560 PGSC0003DMT400060669 PGSC0003DMT400060669 THF1 THF1 PGSC0003DMT400058231 PGSC0003DMT400058231
"PGSC0003DMT400000359" - Conserved gene of unknown function in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400000359Conserved gene of unknown function (276 aa)    
Predicted Functional Partners:
PGSC0003DMT400073562
Thylakoid lumen 18.3 kDa protein (289 aa)
   
        0.575
PGSC0003DMT400050379
APE1 (285 aa)
   
        0.553
PGSC0003DMT400033560
MRNA binding protein (401 aa)
   
        0.551
THF1
Protein THYLAKOID FORMATION1, chloroplastic; Involved in a dynamic process of vesicle-mediated thylakoid membrane biogenesis. Required for the normal organization of vesicles into mature thylakoid stacks and ultimately for leaf development (By similarity) (293 aa)
   
        0.545
PGSC0003DMT400060669
Conserved gene of unknown function (328 aa)
   
        0.536
PGSC0003DMT400058231
Conserved gene of unknown function (199 aa)
   
        0.532
PGSC0003DMT400037674
Conserved gene of unknown function (259 aa)
   
        0.531
PGSC0003DMT400022131
Photosystem II reaction center psb28 protein (180 aa)
   
        0.521
PGSC0003DMT400047280
Photosystem II 11 kDa protein (168 aa)
   
        0.517
PGSC0003DMT400016981
Conserved gene of unknown function (364 aa)
   
        0.511
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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