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PGSC0003DMT400089309 PGSC0003DMT400089309 PGSC0003DMT400077919 PGSC0003DMT400077919 PGSC0003DMT400040127 PGSC0003DMT400040127 PGSC0003DMT400091965 PGSC0003DMT400091965 PGSC0003DMT400002796 PGSC0003DMT400002796 PGSC0003DMT400040652 PGSC0003DMT400040652 PGSC0003DMT400044099 PGSC0003DMT400044099 PGSC0003DMT400000575 PGSC0003DMT400000575 PGSC0003DMT400002794 PGSC0003DMT400002794 PGSC0003DMT400037374 PGSC0003DMT400037374 PGSC0003DMT400020675 PGSC0003DMT400020675
"PGSC0003DMT400000575" - Ccr4-not transcription complex in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400000575Ccr4-not transcription complex (407 aa)    
Predicted Functional Partners:
PGSC0003DMT400077919
CCR4-NOT transcription complex subunit (670 aa)
     
  0.979
PGSC0003DMT400040127
VIP2 (661 aa)
     
  0.979
PGSC0003DMT400020675
Thioredoxin (215 aa)
     
  0.979
PGSC0003DMT400091965
Cell differentiation protein rcd1 (189 aa)
     
  0.975
PGSC0003DMT400089309
Cell differentiation protein rcd1 (306 aa)
     
  0.975
PGSC0003DMT400044099
Cell differentiation protein rcd1 (238 aa)
     
  0.975
PGSC0003DMT400037374
Cell differentiation protein rcd1 (264 aa)
     
  0.975
PGSC0003DMT400002796
Cell differentiation protein rcd1 (400 aa)
     
  0.975
PGSC0003DMT400002794
Cell differentiation protein Rcd1 (166 aa)
     
  0.975
PGSC0003DMT400040652
RNA exonuclease NGL1 (364 aa)
     
  0.974
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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