Full Link:
close STRING Website Improvement Campaign
deny allow Over the next 24 hours, we are collecting usage information on the web-interface (learn more).   Do you allow anonymous tracking of your activity ?
STRINGSTRING
PGSC0003DMT400094317 PGSC0003DMT400094317 PGSC0003DMT400011821 PGSC0003DMT400011821 PGSC0003DMT400087294 PGSC0003DMT400087294 PGSC0003DMT400025666 PGSC0003DMT400025666 PGSC0003DMT400088088 PGSC0003DMT400088088 PGSC0003DMT400080258 PGSC0003DMT400080258 PGSC0003DMT400000646 PGSC0003DMT400000646 PGSC0003DMT400085202 PGSC0003DMT400085202 PGSC0003DMT400005756 PGSC0003DMT400005756 PGSC0003DMT400020987 PGSC0003DMT400020987 PGSC0003DMT400014424 PGSC0003DMT400014424
"PGSC0003DMT400000646" - Phragmoplastin in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400000646Phragmoplastin (610 aa)    
Predicted Functional Partners:
PGSC0003DMT400014424
Pre-mRNA-splicing factor SPF27 homolog (251 aa)
       
      0.898
PGSC0003DMT400025666
Calcium ion binding protein (162 aa)
     
  0.849
PGSC0003DMT400005756
ATP binding protein (817 aa)
     
  0.805
PGSC0003DMT400080258
Binding protein (170 aa)
       
 
  0.774
PGSC0003DMT400020987
Protein kinase (167 aa)
       
 
  0.774
PGSC0003DMT400011821
Binding protein (167 aa)
       
 
  0.774
PGSC0003DMT400094317
Actin-11 (148 aa)
     
  0.674
PGSC0003DMT400088088
Actin (194 aa)
     
  0.674
PGSC0003DMT400087294
Actin, cytoplasmic 2-like isoform 2 (274 aa)
     
  0.674
PGSC0003DMT400085202
Actin 1 (149 aa)
     
  0.674
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
Server load: low (2%)