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PGSC0003DMT400075131 PGSC0003DMT400075131 PGSC0003DMT400022853 PGSC0003DMT400022853 PGSC0003DMT400044280 PGSC0003DMT400044280 PGSC0003DMT400057595 PGSC0003DMT400057595 PGSC0003DMT400072262 PGSC0003DMT400072262 PGSC0003DMT400017726 PGSC0003DMT400017726 PGSC0003DMT400000985 PGSC0003DMT400000985 PGSC0003DMT400075431 PGSC0003DMT400075431 PGSC0003DMT400029953 PGSC0003DMT400029953 PGSC0003DMT400023284 PGSC0003DMT400023284 PGSC0003DMT400023040 PGSC0003DMT400023040
"PGSC0003DMT400000985" - GAMYB-binding protein in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400000985GAMYB-binding protein (601 aa)    
Predicted Functional Partners:
PGSC0003DMT400023040
PP1/PP2A phosphatases pleiotropic regulator PRL1 (307 aa)
     
  0.989
PGSC0003DMT400044280
Pre-mRNA-splicing factor (521 aa)
     
  0.985
PGSC0003DMT400022853
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (164 aa)
     
  0.985
PGSC0003DMT400029953
CDC5 (986 aa)
     
  0.985
PGSC0003DMT400075431
Pre-mRNA-splicing factor (451 aa)
     
  0.983
PGSC0003DMT400057595
Conserved gene of unknown function (580 aa)
     
  0.982
PGSC0003DMT400072262
Small nuclear ribonucleoprotein f; Probable common Sm protein, is found in U1 and U2 snRNPs and may be part of the spliceosome (88 aa)
       
  0.982
PGSC0003DMT400017726
XPA-binding protein (915 aa)
     
  0.982
PGSC0003DMT400023284
ATP-dependent RNA helicase (723 aa)
     
  0.980
PGSC0003DMT400075131
RRM-containing RNA-binding protein (97 aa)
     
  0.979
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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