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PGSC0003DMT400072860 PGSC0003DMT400072860 PGSC0003DMT400050219 PGSC0003DMT400050219 PGSC0003DMT400018139 PGSC0003DMT400018139 PGSC0003DMT400089149 PGSC0003DMT400089149 PGSC0003DMT400001041 PGSC0003DMT400001041 PGSC0003DMT400057274 PGSC0003DMT400057274 PGSC0003DMT400025666 PGSC0003DMT400025666 PGSC0003DMT400059650 PGSC0003DMT400059650 PGSC0003DMT400000336 PGSC0003DMT400000336 PGSC0003DMT400031664 PGSC0003DMT400031664 PGSC0003DMT400023562 PGSC0003DMT400023562
"PGSC0003DMT400001041" - Conserved gene of unknown function in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400001041Conserved gene of unknown function (286 aa)    
Predicted Functional Partners:
PGSC0003DMT400072860
Vesicle transport V-snare protein vti1a (221 aa)
       
 
  0.932
PGSC0003DMT400050219
Vesicle transport v-SNARE 11 (221 aa)
       
 
  0.932
PGSC0003DMT400025666
Calcium ion binding protein (162 aa)
     
  0.889
PGSC0003DMT400031664
Ubiquitin (583 aa)
     
  0.876
PGSC0003DMT400023562
Ubiquitin (580 aa)
     
  0.876
PGSC0003DMT400018139
Phosphatidylinositol 3-and 4-kinase family protein (568 aa)
     
  0.876
PGSC0003DMT400000336
Phosphatidylinositol 3-and 4-kinase family protein (571 aa)
     
  0.876
PGSC0003DMT400089149
Polyubiquitin (457 aa)
     
  0.860
PGSC0003DMT400059650
Ubiquitin (205 aa)
     
  0.860
PGSC0003DMT400057274
Polyubiquitin (190 aa)
     
  0.860
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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