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PGSC0003DMT400044944 PGSC0003DMT400044944 PGSC0003DMT400075608 PGSC0003DMT400075608 PCM5 PCM5 PGSC0003DMT400070437 PGSC0003DMT400070437 PGSC0003DMT400097662 PGSC0003DMT400097662 Pot42 Pot42 PGSC0003DMT400069000 PGSC0003DMT400069000 PGSC0003DMT400088098 PGSC0003DMT400088098 PGSC0003DMT400065464 PGSC0003DMT400065464 PGSC0003DMT400043683 PGSC0003DMT400043683 PGSC0003DMT400066991 PGSC0003DMT400066991
"Pot42" - Actin-11 in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
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[Homology]
Score
Pot42Actin-11 (378 aa)    
Predicted Functional Partners:
PGSC0003DMT400097662
Calmodulin-3 (173 aa)
     
  0.969
PCM5
Calmodulin-5/6/7/8; Calmodulin mediates the control of a large number of enzymes, ion channels and other proteins by Ca(2+). Among the enzymes to be stimulated by the calmodulin-Ca(2+) complex are a number of protein kinases and phosphatases (149 aa)
     
  0.969
PGSC0003DMT400070437
Calmodulin (149 aa)
     
  0.969
PGSC0003DMT400066991
Conserved gene of unknown function; Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks (185 aa)
       
  0.925
PGSC0003DMT400075608
Glyceraldehyde-3-phosphate dehydrogenase B subunit (450 aa)
     
 
  0.923
PGSC0003DMT400044944
Glyceraldehyde 3-phosphate dehydrogenase (338 aa)
     
 
  0.923
PGSC0003DMT400043683
F-actin-capping protein subunit beta (301 aa)
     
 
  0.921
PGSC0003DMT400088098
Profilin; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations (132 aa)
     
  0.919
PGSC0003DMT400069000
Profilin-1; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations (133 aa)
     
  0.919
PGSC0003DMT400065464
Profilin; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations (131 aa)
     
  0.919
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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