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PGSC0003DMT400021589 PGSC0003DMT400021589 PGSC0003DMT400073947 PGSC0003DMT400073947 PGSC0003DMT400075431 PGSC0003DMT400075431 PGSC0003DMT400047178 PGSC0003DMT400047178 PGSC0003DMT400057595 PGSC0003DMT400057595 PGSC0003DMT400060440 PGSC0003DMT400060440 PGSC0003DMT400017726 PGSC0003DMT400017726 PGSC0003DMT400001251 PGSC0003DMT400001251 PGSC0003DMT400044280 PGSC0003DMT400044280 PGSC0003DMT400029670 PGSC0003DMT400029670 PGSC0003DMT400029953 PGSC0003DMT400029953
"PGSC0003DMT400001251" - Pentatricopeptide repeat-containing protein in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400001251Pentatricopeptide repeat-containing protein (278 aa)    
Predicted Functional Partners:
PGSC0003DMT400073947
PRP8 protein (2389 aa)
     
  0.993
PGSC0003DMT400047178
Pre-mRNA splicing factor (1019 aa)
     
  0.986
PGSC0003DMT400017726
XPA-binding protein (915 aa)
     
  0.985
PGSC0003DMT400075431
Pre-mRNA-splicing factor (451 aa)
     
  0.985
PGSC0003DMT400044280
Pre-mRNA-splicing factor (521 aa)
     
  0.985
PGSC0003DMT400057595
Conserved gene of unknown function (580 aa)
     
  0.984
PGSC0003DMT400029953
CDC5 (986 aa)
     
  0.984
PGSC0003DMT400029670
Small nuclear ribonucleoprotein (105 aa)
       
  0.982
PGSC0003DMT400021589
Small nuclear ribonucleoprotein f (91 aa)
     
  0.981
PGSC0003DMT400060440
Conserved gene of unknown function (861 aa)
     
  0.980
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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