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PGSC0003DMT400083253 PGSC0003DMT400083253 GolS3 GolS3 InvCD111 InvCD111 PGSC0003DMT400065096 PGSC0003DMT400065096 PGSC0003DMT400023280 PGSC0003DMT400023280 InvCD141 InvCD141 PGSC0003DMT400001378 PGSC0003DMT400001378 GolS1 GolS1 PGSC0003DMT400006639 PGSC0003DMT400006639 PGSC0003DMT400013376 PGSC0003DMT400013376 PGSC0003DMT400040043 PGSC0003DMT400040043
"PGSC0003DMT400001378" - Stachyose synthase in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400001378Stachyose synthase (779 aa)    
Predicted Functional Partners:
PGSC0003DMT400013376
Galactinol synthase (336 aa)
     
 
  0.908
GolS3
Galactinol synthase (337 aa)
     
 
  0.908
PGSC0003DMT400023280
Stachyose synthase (873 aa)
         
0.903
GolS1
Galactinol synthase (321 aa)
         
  0.902
PGSC0003DMT400040043
Galactinol synthase (327 aa)
         
  0.902
PGSC0003DMT400006639
Cell wall invertase (571 aa)
         
  0.901
PGSC0003DMT400083253
Beta-fructofuranosidase, cell wall isozyme (507 aa)
         
    0.900
InvCD141
Beta-fructofuranosidase (582 aa)
         
    0.900
InvCD111
Beta-fructofuranosidase (536 aa)
         
    0.900
PGSC0003DMT400065096
Alpha-galactosidase/alpha-n-acetylgalactosaminidase (418 aa)
         
    0.900
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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